Datasets and Supplementary Online Material for:

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

Turnbaugh, P.J., Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., and Gordon, J.I. Sci. Transl. Med., 6ra14 (2009)

Supplementary Online Material may be downloaded here.

Datasets from shotgun sequencing projects have been deposited at DBJ/EMBL/GenBank under accession number 39857 (C.innocuum strain SB23) and 39859 (humanized mouse gut microbiome). 454 and Illumina sequencing reads have been deposited in the NCBI Short Read Archive. Nearly full-length 16S rRNA gene sequences are deposited in GenBank under the accession numbers GQ491120-GQ493997. The annotated SB23 genome is available for further analysis in RAST (

Additional supplemental fasta files can be found here, including our preprocessed and labeled V2 16S rRNA gene sequencing datasets, nearly full-length 16S rRNA gene sequencing datasets, and a file containing all predicted genes in the SB23 draft genome.