All publications
For a full, searchable list of publications:
Select publications
Wesener, D.A., Beller, Z.W., Hill, M.F., Yuan, H., Belanger, D.B., Frankfater, C., Terrapon, N., Henrissat, B., Rodionov, D.A., Leyn, S.A., Osterman, A., van Hylckama Vlieg, J.E.T., and Gordon, J.I. In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides. Nat. Chem. Biol., doi: 10.1038/s41589-024-01763-6 (2024).
Hibberd, M.C., Webber, D.M., Rodionov, D.A., Chen, R.Y., Zhou, C., Lynn, H.M., Wang, Y., Chang, H-W., Kazanov, M.D., Arzamasov, A.A., Leyn, S.A., Henrissat, S., Lombard, V., Terrapon, N., Henrissat, B., Castillo, J.J., Couture, G., Bacalzo, Jr., N.P., Chen, Y., Lebrilla, C.B., Mostafa, I., Das, S., Mahfuz, M., Barratt, M.J., Osterman, A.L., Ahmed, T., and Gordon, J.I. Bioactive glycans in a microbiome-directed food for malnourished children, Nature 625:157-165 (2024).
Chang, H-W., Lee, E.M., Wang, Y., Zhou, C., Pruss, K.M., Henrissat, S., Chen, R.Y., Kao, C., Hibberd, M.C., Lynn, H.M., Webber, D.M., Crane, M., Cheng, J., Rodionov, D.A., Arzamasov, A.A., Castillo, J.J., Couture, G., Chen, Y., Balcazo, Jr., N.P., Lebrilla, C.B., Terrapon, N., Henrissat, B., Ilkayeva, O.,Muehlbauer, M.J., Newgard, C.B., Mostafa, I., Das, S., Mahfuz, M., Osterman, A.L., Barratt, M.J., Ahmed, T., and Gordon J.I. Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition Nature Microbiol. 9:922-937 (2024).
Hartman, S.J., Hibberd, M.C., Mostafa, I., Nahar, N.N., Md. Islam, M., Zaman, M.U., Huq, S., Mahfuz, M., Islam, md. T., Mukherji, K., Moghaddam, V.A., Chen, R.Y., Province, M.A. Webber, D.M., Henrissat, S., Henrissat, B., Terrapon, N., Rodionov, D.A., Osteman, A.L., Barratt, M.J., Ahmed, T., and Gordon, J.I., A microbiome -directed therapeutic food for children recovering from severe acute malnutrition. Science Translational Medicine, 16: eadn2366 (2024).
Cheng, J., Venkatesh, S., Ke, K., Barratt, M.J., and Gordon, J.I. A human gut Faecalibacterium prausnitzii fatty acid amide hydrolase. Science, 386: eado6828 (2024).
Gordon, J.I., Barratt, M.J., Hibberd, M.C., Rahman, M., and Ahmed, T., Establishing human microbial observatory programs in low-and middle-income countries. Ann N Y Acad Sci. 1540: 13-20 (2024).
Han, N.D., Cheng, J., Delannoy-Bruno, O., Webber, D., Terrapon, N., Henrissat, B., Rodionov, D.A., Arzamasov, A.A., Osterman, A.L., Hayashi, D.K., Meynier, A., Vinoy, S., Desai, S., Desai, C., Marion, S., Barratt, M.J., Heath, A.C., and Gordon, J.I. Microbial liberation of N-methylserotonin from orange fiber in gnotobiotic mice and humans, Cell, 185, 2495-2509 (2022).
Barratt, M.J., Nuzhat, S., Ahsan, K., Frese S.A., Arzamasov, A., Sarker, S.A., Islam, M.M., Palit, P., Islam, M.R., Hibberd, M.C., Nakshatri, S., Cowardin, C.A., Guruge, J.L., Byrne, A.E., Venkatesh, S., Sundaresan, V., Henrick, B., Duar, R., Mitchell, R.D., Casaburi, G., Prambs, J., Flannery, R., Mahfuz, M., Rodionov, D.A., Osterman, A.L., Kyle, D., Ahmed, R., and Gordon, J.I. Bifidobacterium infantis treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition. Science Translational Medicine, 14, abk1107 (2022).
Chen, R., Mostafa, I., Hibberd, M.C., Das, S., Mahfuz, M., Naila, N.N., Islam, M.M., Huq, S., Alam, M.A., Zaman, M.U., Raman, A.S., Webber, D., Zhou, C., Sundaresan, V., Ahsan, K., Meier, M.F., Barratt, M.J., Ahmed, T., and Gordon, J.I. A Microbiota-directed food intervention for undernourished children. New Engl. J. Med. 384, 1517-1528 (2021).
Delannoy-Bruno, O., Desai, C., Raman, A.S., Chen, R.Y., Hibberd, M.C., Cheng, J., Han, N., Castillo, J.J., Couture, G., Lebrilla, C.B., Lombard, V., Henrissat, B., Leyn, S.A., Rodionov, D.A., Osterman, A.L., Hayashi, D.K., Meynier, A., Vinoy, S., Kirbach, K., Wilmot, T., Heath, A.C., Klein, S., Barratt, M.J. and Gordon, J.I. Evaluating microbiome-directed fibre snack food prototypes in gnotobiotic mice and humans, Nature, 595, 91-95 (2021).
Chen, R.Y., Kung, V.L., Das, S., Hossain, M.S., Hibberd, M.C., Guruge, J., Mahfuz, M., Begum, S.M.K.N., Rahman, M.M., Fahim, S.M., Gazi, M. A., Haque, R., Sarker, S.A., Mazunder, R.N., Di Luccia, B., Ahsan, K., Kennedy, E., Santiago-Borges, J., Rodionov, D.A., Leyn, S.A., Osterman, A.L., Barratt, M.J., Ahmed, T., and Gordon, J.I. Duodenal microbiota in stunted undernourished children with enteropathy. New Engl. J. Med. 283, 321-333 (2020).
Di Luccia B., Ahern, P.P., Griffin N.W., Cheng, J., Guruge, J.L., Byrne, A.E., Rodionov, D.A., Leyn, S.A., Osterman, A.L., Ahmed T., Colonna, M., Barratt, M.J., Delahaye, N.F., and Gordon, J.I., Oral cholera vaccination response to a combined prebiotic and microbial intervention in a gnotobiotic mouse model of childhood undernutrition. Cell Host & Microbe 27, 899-908 (2020).
Gehrig, J.L., Venkatesh, S Chang, H-W., Hibberd, M.C., Kung, V.L., Cheng, J., Chen, R.Y., Subramanian, S., Cowardin, C.A., Meier, M., O’Donnell, D., Talcott, M., Spears, L.D., Semenkovich, C.F., Henrissat, B., Giannone, R.J., Hettich, R.L., Ilkayeva, O., Muehlbauer, M., Newgard, C.B., Sawyer, C., Head, R., Rodionov, D.A., Arzamosov, A.A., Leyn, S.A., Osterman, A.L., Hossain, I., Islam, M., Choudhury, N., Sarker, S., Huq, S., Mahmud, I., Mostafa, I., Mahfuz, M., Barratt, M.J., Ahmed, T., and Gordon, J.I., Effects of microbiota-directed foods in gnotobiotic animals and undernourished children, Science 365, eaau4732 (2019).
Raman, A.S., Gehrig, J.L., Subramanian, S., Venkatesh, M.C. Hibberd, S., Kang, G., Bessong, P.O., Lima, A.A.M., Kosek, M.N., Petri, W.A., Huq, S., Mostafa, I., Islam, M., Mahfuz, M., Haque, R., Ahmed, T., Barratt, M.J., and Gordon, J.I. A sparse covarying unit that describes healthy and impaired human gut microbiota development, Science 364, eaau4735 (2019).
Patnode, M.L., Beller, Z.W., Han, N.D., Cheng, J., Peters, S.L., Terrapon, N., Henrisssat, B., Le Gall, S., Saulnier, L., Hayashi, D.K., Meynier, A., Vinoy, S., Giannone, R.J., Hettich, R.L., and Gordon, J.I., Interspecies competition impacts targeted manipulation of human gut bacteria by fiber-derived glycans. Cell 179, 59-73 (2019).