Genome sequences and annotations for all 10 bacteria community members:

model_gut_microbiota_genomes.tar.gz

Abundance data for the 10-member bacterial community for each diet-period/mouse combination:

model_gut_microbiota_data.tar.gz

Matlab files for loading the raw abundance data:

model_gut_microbiota_matlab.tar.gz

The log2(RPKM) RNA-Seq expression values for each of the species in the model microbiota:

transcriptionMatrixBySpecies.xlsx