Program blastn blastp blastx tblastn tblastx Database a.fa Bacteroides_distasonis_aa.fa Bacteroides_distasonis_genome_nt.fa Bacteroides_distasonis_nt.fa bacteroides_fragilis_638R Bacteriodes thetaiotaomicron_nt Bacteroides thetaiotaomicron_aa Bacteroides_Thetaiotaomicron_nt (pre-assembly) Bacteroides_Thetaiotaomicron_3731_ORFs_a Bacteroides_thetaiotaomicron_3731_ORF_nt. fa Bacteroides_thetaiotaomicron_3731_genome_nt.fa Bacteroides_thetaiotaomicron_7330_ORF_nt. fa Bacteroides_thetaiotaomicron_7330_aa.fa Bacteroides_thetaiotaomicron_7330_genome. Bacteroides_Wh2.fa Bacteroides_Wh2_ORFs_aa.fa Bacteroides_Wh2_ORFs_nt.fa fa Bacteroides_vulgatus_aa.fa Bacteroides_vulgatus_genome_nt.fa bacteroides_fragilis_638R chlorobium_phaeobacteroides_BS1 chlorobium_phaeobacteroides_DSMZ_266T chlorochromatium_aggregatum Methanobrevibacter Smithii Genome nt Methanobrevibacter Smithii ORFs aa Methanobrevibacter Smithii ORFs nt p_intermedia pelicictyon_luteolum pelodictyon_phaeoclathratiforme prevotella_ruminicola tanerella_forsythus unpublished_bacteroidetes.faa

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Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF

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